Resume

A brief overview of my professional experience.

Basics

Name Sarthak Pati
Summary Researcher and Software Architect specializing in designing robust and deployable solutions that leverage machine learning and artificial intelligence.

Education

Work

  • 2023.09 - Present
    Software Architect
    Indiana University
    • Designed and developed software infrastructure to advance Federated Learning R&D
    • Led compliance with data integrity, privacy, and security standards
    • Defined best practices for software development
    • Coordinated academic collaborations and industrial partnerships
    • Contributed to grant proposals
  • 2023.02 - 2023.08

    Philadelphia, USA

    Software Architect
    University of Pennsylvania
    • Led the development of the Federated Tumor Segmentation (FeTS) Initiative
    • Designed, implemented and led the development of the Generalized Nuanced Deep Learning Framework (GaNDLF)
    • Conducted seminars on medical image analysis and machine learning using Python/C++
    • Collaborated with the open-source scientific community to enable the transition of medical imaging research into the open-source community
  • 2014.12 - 2023.02

    Philadelphia, USA

    Senior Software Developer
    University of Pennsylvania
    • Led the development of the Federated Tumor Segmentation (FeTS) Initiative
    • Designed and implemented the Generalized Nuanced Deep Learning Framework (GaNDLF)
    • Enabled the transition of medical imaging research into the open-source community
  • 2013.09 - 2014.04
    Student Developer
    microDimensions
    • Extending the software framework by adding support for more file types and improving the segmentation and registration framework.
  • 2013.04 - 2014.05
    Student Research Assistant
    Technical University of Munich
    • [MS Thesis] Tracking flexible needles in Ultrasound-assisted Robotic surgery using particle filters
    • Real-time tracking and mosaicking of surgical tools and the retina in Ophthalmoscopy datasets
  • 2012.10 - 2013.04

    Forchheim, Germany

    Working Student
    Siemens
    • Angio-IVUS Co-registration with 3D Reconstructed Vessels.
  • 2012.04 - 2012.09
    Student Research Assistant
    Technical University of Munich
    • Real-time camera pose estimation for a single camera single marker system.
  • 2012.02 - 2012.04

    Weilheim, Bavaria

    Working Student
    Advanced Realtime Tracking GmbH
    • Detection of non-spherical markers for industrial tracking.
  • 2010.09 - 2011.07
    Research Associate
    Indian Institute of Technology, Delhi
    • Finite element analysis of simulated human cell clusters under electric field. Develop a GUI for easier visualization
  • 2010.01 - 2010.06
    Project Trainee
    Indian Institute of Technology, Delhi
    • [BE Thesis] Real Time Locomotion Classification based on surface EMG signals from thigh muscles for use in an above-knee prosthetic device.
  • 2009.06 - 2009.07
    Project Trainee
    Defence Research and Development Organisation (DRDO)
    • Quality assessment in modern MRI systems and analyze methods to improve image acquisition and processing for a new neck coil design

Awards

  • 2020.06.30
    Dean's List for Doctoral Studies
    Technical University of Munich
    Awarded for outstanding academic performance in the Doctoral thesis proposal.
  • 2019.06.30
    Certification in Supervisory Skills
    University of Pennsylvania
    The Supervisory Skills Certificate program provides an introduction to the skills and information necessary to being an effective supervisor within the Perelman School of Medicine (SOM). Instructors for the program represent a variety of offices across the SOM and University, including the Office of General Counsel, the Office of International Programs, the Office of Affirmative Action and Equal Opportunity Programs, Perelman SOM Human Resources, and the Office of Organization Effectiveness.
  • 2019.04.30
    Automatic Non-rigid Histological Image Registration Winner
    IEEE International Symposium on Biomedical Imaging
    Automatic Non-rigid Histological Image Registration (ANHIR) challenge aims at the automatic nonlinear image registration of 2D microscopy images of histopathology tissue samples stained with different dyes. The task is difficult due to non-linear deformations affecting the tissue samples, different appearance of each stain, repetitive texture, and the large size of the whole slide images. Our team was placed 2nd overall among all competitors and were invited to present our method at the workshop.
  • 2015.10.31
    Winner of the Brain Tumor Segmentation Challenge
    MICCAI
    Lead the development of the software packages used by the team that won the BRATS (http://braintumorsegmentation.org/) challenge in 2015.
  • 2008.03.31
    Category Head, Design
    Manipal Univeristy
    Category Head at Revels 2008, the cultural festival of Manipal Institute of Technology (Manipal University).
  • 2007.10.31
    Category Head, Design
    Manipal University
    Lead the Design Team at Techtatva 2007, the technical festival of Manipal University.

Certificates

UW Human Subjects Protections Course
CITI Program
Change Management for Projects
LinkedIn
Full Member
Sigma Xi, The Scientific Research Honor Society
Biomedical Researcher
CITI Program
Social/Behavioral Researchers
CITI Program
MIC-GPU: High-Performance Computing for Medical Imaging on Programmable Graphics Hardware (GPU)
SPIE, the international society for optics and photonics

Volunteer

Skills

Front-End Development
API Development
Technical Documentation
Software Design
Linux
Computer Science
Containers
Debuggers
Programming
Biomedical Engineering
OpenCV
Computer Vision
Docker
Debugging
MRI
Medical Imaging
Software Development
Image Processing
Education
Applied Machine Learning
Pattern Recognition
Deep Learning
Mathematics
Machine Learning Algorithms
Cloud Computing
Algorithms
Azure DevOps
Team Management
Image Analysis
Object-Oriented Programming
Python
C++
DevOps
Continuous Integration
Development Tools
LaTeX
Versioning
Machine Learning
Research
Communication
Continuous Integration and Continuous Delivery (CI/CD)
Digital Image Processing
Artificial Intelligence
Embedded Systems
Git
Data Analysis
Federated Learning
Matlab
Cross-functional Team Leadership
Digital Signal Processors

Languages

Bengali
Elementary
English
Professional Working
German
Elementary
Hindi
Professional Working
Oriya
Native Speaker
Punjabi
Elementary